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    Microsatellite genotype data for 3 eucalypt species. Data include progeny and adults from across a gradient of habitat fragmentation. These microsatellite data could be further used in additional analyses, e.g. genetic diversity. Samples collected from stands on eucalypts as follows: non-neighbouring adult trees had leaf and seeds collected. Leaf was used to genotype the adults. Seeds were germinated, tissue then collected, and the same microsatellites genotyped - i.e. open-pollinated progeny arrays. The dataset is possibly useful for meta-analysis or review of effects of habitat fragmentation on plants (e.g. mating system, genetic diversity etc).